How to Apply Conversion Table to FM file.

I have a conversion table generated for a group of files I am trying to structure. I want to be able to apply the conversion table with Extendscript. The script I have doesn't save any converted file. I am not sure why is it not saving the file. I was under the impression that the "Structure Generator" should create the new file. If this incorrect.

Here is the code I am trying to use.

var myFile = File.openDialog ("Select File to Convert");

var myCT = File.openDialog ("Select ConversionTable");
var CT = openFile (myCT.fsName, 0);

applyConversionTable (myFile.fsName, CT)
closeFile (CT);

function applyConversionTable(fileName, CT){
    var doc= openFile (fileName, 0);    var name = fileName.replace(/[\w\.]+$/,"test.fm")     CallClient("Structure Generator", "InputDocId " + doc.id);    CallClient("Structure Generator", "RuleDocId " + CT.id);    CallClient("Structure Generator", "OutputDocName " + name);    CallClient("Structure Generator", "GenerateDoc");    closeFile (doc);
}

function openFile( fileName, visible){
        var i = 0;    var doc = 0;        var openParams = GetOpenDefaultParams();    var retParams = new PropVals();        i = GetPropIndex(openParams, Constants.FS_AlertUserAboutFailure);    openParams[i].propVal.ival = false;    i = GetPropIndex(openParams, Constants.FS_MakeVisible);    openParams[i].propVal.ival = visible;    i = GetPropIndex(openParams, Constants.FS_FileIsOldVersion);    openParams[i].propVal.ival = Constants.FV_DoOK;    i = GetPropIndex(openParams, Constants.FS_FileIsInUse);    openParams[i].propVal.ival = Constants.FV_ResetLockAndContinue;    i = GetPropIndex(openParams, Constants.FS_FontChangedMetric);    openParams[i].propVal.ival = Constants.FV_DoOK;    i = GetPropIndex(openParams, Constants.FS_FontNotFoundInCatalog);    openParams[i].propVal.ival = Constants.FV_DoOK;    i = GetPropIndex(openParams, Constants.FS_FontNotFoundInDoc);    openParams[i].propVal.ival = Constants.FV_DoOK;    i = GetPropIndex(openParams, Constants.FS_RefFileNotFound);    openParams[i].propVal.ival = Constants.FV_AllowAllRefFilesUnFindable;        doc = Open(fileName, openParams, retParams);        if (doc.ObjectValid() ===1){        doc.openedByScript = true;    }    else{        PrintOpenStatus(retParams);    }    return doc
}

function closeFile(doc){
    Constants.FF_CLOSE_MODIFIED = 1;    var res = doc.Close(Constants.FF_CLOSE_MODIFIED);
}